PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g08730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 567aa    MW: 62042.4 Da    PI: 5.7767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g08730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11418464455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Vradi08g08730.1 418 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 464
                      799***********************66......*****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-43113289IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259414463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-13417468No hitNo description
SuperFamilySSF474592.22E-17417483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17418483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9418464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13420469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.37E-5498565No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MEIEGFVAAC TSRWVVKVVG LGFLWRRDND NEAVTAYGFR GSATVAMARV SCLMEIKEGG  60
RKMMGEKFCV NEEDKGVLES VLGAEAVAFF ISALSNNVFS SVVAPSVGAD STLRQRLCQL  120
VEGSKWNYAV FWQVAGLKSG GSALIWGDGH CSDPKGKRSS MGKDDEQEVR KMVLQKLDAC  180
FGGCVSKEAN YARLDRLSDL LMFYLSSMCY IFGFDSPCGP GSSFKSGKLI WTSDVAGCLN  240
QLESRSFLGK VAGLQTVVFV PLKSGVVELG SNEVVSEEQG FVEMVKTAFG ESSPGQTKVF  300
PKIFGHELSL GDTKSQSITI SFSPKVEDDP GFTSDSFEVQ GLGLNHAYGN SSNGTLGDSS  360
EGKMFPQLNQ MMGGNFNAQA RVPCLDLGNE DTSSIHADER KPRKRGRKPA NGREEPLNHV  420
EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITFI TDLQMKIKVL EAEKNMINNK  480
DQRLSLPDMD FQEREDDTVV TVRCPLDTHP VSDVVKTFRE HQIVAQDTNV STTDDKIIHT  540
FSIRTEGGEA AAIQLKEKLE AALSKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-191102896192Transcription factor MYC3
4rqw_B2e-191102896192Transcription factor MYC3
4rs9_A2e-191102896192Transcription factor MYC3
4yz6_A2e-191102896192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399407RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514707.10.0PREDICTED: transcription factor bHLH3
TrEMBLA0A0S3SRS10.0A0A0S3SRS1_PHAAN; Uncharacterized protein
STRINGGLYMA13G18131.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-154bHLH family protein